VESV seqs

Vesicular exanthema of swine virus (VESV)
Virus	Strain	Region	Length	Accession No.	Reference	Comments
VESV-B1-34	aka 1934B	2C-like helicase(p)	298	U18480	Neill et al., 1995
VESV-B1-34	aka 1934B	polymerase(p)	295	U18736	Neill et al., 1995
VESV-A48		CG	8284	U76874; AF181082	Neill et al., 1998; Neill et al., unpublished (b)
		2C-like helicase(p)	357	U14678	Seal et al., 1995
		2C-like helicase(p)	357	U18481	Neill et al., 1995
		polymerase(p)	519	U14677	Seal et al., 1995
		polymerase(p)	520	U18737	Neill et al., 1995
		capsid (region A)	712	AJ131384	Reid et al., 1999
VESV-B51		pol(p)+capsid(p)	1668	DQ666632	Reid et al., 2007
VESV-C52		2C-like helicase(p)	295	U18482	Neill et al., 1995
		polymerase(p)	373	U18738	Neill et al., 1995
		pol(p)+capsid(p)	1668	DQ666633	Reid et al., 2007
VESV-D53
VESV-E54		2C-like helicase(p)	301	U18483	Neill et al., 1995
VESV-E54		polymerase(p)	309	U18739	Neill et al., 1995
VESV-F55	FS 330
VESV-G55	FS 332	pol(p)+capsid(p)	1668	DQ666637	Reid et al., 2007
VESV-H54
VESV-I55	GF 1	2C-like helicase(p)	298	U18484	Neill et al., 1995
VESV-I55	GF 1	polymerase(p)	307	U18740	Neill et al., 1995
VESV-J56	Sec. 3-56
VESV-K54	Sec. 3-54	pol(p)+capsid(p)	1668	DQ666634	Reid et al., 2007
San Miguel sea lion virus (SMSV)
Virus	Strain	Region	Length	Accession No.	Reference	Comments
SMSV-1	1MR	pol(p), complete capsid	2745	M87481	Neill, 1992
SMSV-1	1MR	CG	8284	U15301; AF181081	Neill et al., 1995; Neill et al., unpublished (a)
SMSV-2	2MR	2C-like helicase(p)	357	U18476	Neill et al., 1995
		polymerase(p)	520	U18730	Neill et al., 1995
		capsid (region A)	564	U76881	Neill et al., 1998
		capsid (region A)	593	AJ131385	Reid et al., 1999
		capsid (region E)	660	U76882	Neill et al., 1998
		pol(p)+capsid(p)	1668	DQ666629	Reid et al., 2007
SMSV-3 was later shown to be a mixture of SMSV-1 and SMSV-2
SMSV-4	15FT	pol(p) + complete capsid	2744	M87482	a) Neill, 1992
		non-struct. genes	3653	U15302	b) Neill et al., 1995
		2C	357	U14673	c) Seal et al., 1995
		pol	519	U14674	d) Seal et al., 1995
		capsid (region A)	543	AJ131386	Reid et al., 1999
		pol(p)+capsid(p)	1668	DQ666630	Reid et al., 2007
SMSV-5	205-73	2C-like helicase(p)	357	U18477	Neill et al., 1995
		polymerase(p)	520	U18731	Neill et al., 1995
		polymerase(p)	453	U52093	Matson et al., 1996
		capsid (region A)	520	U76883	Neill et al., 1998
		capsid (region E)	678	U76884	Neill et al., 1998
		3C-like	280	DQ300285	Smith et al., 2006
	Hom-1	pol(p)	453	U62327	Smith et al., 1998
	4 (human)	capsid (region E)	435	DQ300286	Smith et al., 2006
SMSV-6	439	2C-like helicase(p)	357	U18478	Neill et al., 1995
		polymerase(p)	419	U18732	Neill et al., 1995
		capsid (region A)	520	U76885	Neill et al., 1998
		capsid (region A)	671	AJ131387	Reid et al., 1999
		capsid (region E)	675	U76886	Neill et al., 1998
SMSV-7		2C-like helicase(p)	357	U18479	Neill et al., 1995
		polymerase(p)	414	U18733	Neill et al., 1995
		capsid (region A)	508	U76887	Neill et al., 1998
		capsid (region E)	676	U76888	Neill et al., 1998
SMSV-8	274
SMSV-9	427	polymerase(p)	450	U52090	Matson et al., 1996
	P163N (1992)	capsid	2124	AY772539	Zintz et al., unpublished
	P127N (1992)	capsid	2132	AY772543	Zintz et al., unpublished
	P163R (1992)	capsid	2120	AY772544	Zintz et al., unpublished
SMSV-10	V-31-77	pol(p)+capsid(p)	1668	DQ666631	Reid et al., 2007
SMSV-11	804T
SMSV-12	2615T
SMSV-13	CSL-461	2C-like helicase(p)	357	U18474	Neill et al., 1995
		polymerase(p)	543	U18734	Neill et al., 1995
		polymerase(p)	450	U52087	Matson et al., 1996
		capsid (region A)	447	U76877	Neill et al., 1998
		capsid (region A)	723	AJ131388	Reid et al., 1999
		capsid (region E)	607	U76878	Neill et al., 1998
		pol(p)+capsid(p)	1668	DQ666636	Reid et al., 2007
SMSV-14	A1280	2C-like helicase(p)	357	U18475	Neill et al., 1995
		polymerase(p)	436	U18735	Neill et al., 1995
		capsid (region A)	520	U76879	Neill et al., 1998
		capsid (region E)	666	U76880	Neill et al., 1998
SMSV-15	220R (?)	polymerase(p)	453	U52088	Matson et al., 1996
SMSV-16	?	polymerase(p)	453	U52089	Matson et al., 1996
SMSV-17	Zc-91PG (?)	polymerase(p)	453	U52094	Matson et al., 1996
SMSV-17	Zc-91PG (?)	capsid	2650	U52005	Matson et al., 1996
Bovine calicivirus (BCV) - Bos-1
Virus	Strain	Region	Length	Accession No.	Reference	Comments
BCV	? (Tillamook)	2C-like helicase(p)	357	U18470	Neill et al., 1995
		polymerase(p)	520	U18741	Neill et al., 1995
		capsid (region A)	427	U76875	Neill et al., 1998
		capsid (region E)	666	U76876	Neill et al., 1998
Bovine calicivirus (BCV) - Bos-2
Virus	Strain	Region	Length	Accession No.	Reference	Comments
BCV	Bos-2	polymerase(p)	448	AY069947	Smith et al., 2002
Primate calicivirus (PCV) - Pan-1
Virus	Strain	Region	Length	Accession No.	Reference	Comments
PCV	78-0022 (Lowland Gorilla)	2C-like helicase(p)	301	U18472	Neill et al., 1995
		polymerase(p)	489	U18742	Neill et al., 1995
		polymerase(p)	453	U52086	Matson et al., 1996
	78-0029 (Pygmy chimpanzee)	CG	8304	AF091736	Rinehart-Kim et al., 1998
Cetacean calicivirus (CCV) - Tur-1
Virus	Strain	Region	Length	Accession No.	Reference	Comments
CCV	78-0041 (?) (Dolphin)	2C-like helicase(p)	301	U18471	Neill et al., 1995
CCV	78-0041 (?) (Dolphin)	polymerase(p)	453	U52091	Matson et al., 1996
Skunk calicivirus (SCV)
Virus	Strain	Region	Length	Accession No.	Reference	Comments
SCV	?	2C-like helicase(p)	357	U18473	Neill et al., 1995
	?	polymerase(p)	520	U18743	Neill et al., 1995
	4-1L	2C(p)	357	U14667	Seal et al., 1995	large plaque of isolate 4
	4-1L	polymerase(p)	519	U14668	Seal et al., 1995	large plaque of isolate 4
	4-2S	2C(p)	357	U14669	Seal et al., 1995	small plaque of isolate 4
	4-2S	polymerase(p)	519	U14670	Seal et al., 1995	small plaque of isolate 4
	7-2L & 7-3L	2C(p)	357	U14671	Seal et al., 1995	two large plaques of isolate 7
	7-2L & 7-3L	polymerase(p)	519	U14672	Seal et al., 1995	two large plaques of isolate 7
Rabbit calicivirus (RaCV)
Virus	Strain	Region	Length	Accession No.	Reference	Comments
RaCV	4	CG	8380	AJ866991	Martin Alonso et al., 2005
Reptile calicivirus (RCV) - Cro-1
Virus	Strain	Region	Length	Accession No.	Reference	Comments
RCV	78-0002 (Aruba Island Rattlesnake)	polymerase(p)	453	U52092	Matson et al., 1996
	78-0002 (Aruba Island Rattlesnake)	capsid	2118	AY772542	Zintz et al., unpublished
	78-0023 (Eyelash Viper )	capsid	2133	AY772538	Zintz et al., unpublished
	78-0010 (Aruba Island Rattlesnake)	capsid	2118	AY772540	Zintz et al., unpublished
	78-0003 (Aruba Island Rattlesnake)	capsid	2130	AY772541	Zintz et al., unpublished
Walrus calicivirus (WCV)
Virus	Strain	Region	Length	Accession No.	Reference	Comments
WCV	78-0022 (?)	CG	8289	AF321298	Ganova-Raeva et al., 2004
Untyped
Virus	Strain	Region	Length	Accession No.	Reference	Comments
Untyped	N102 (human)	pol(p)	113	DQ300287	Smith et al., 2006
Untyped	N104 (human)	pol(p)	113	DQ300288	Smith et al., 2006
Untyped	214 (human)	pol(p)	113	DQ300289	Smith et al., 2006
Untyped	298 (human)	pol(p)	112	DQ300290	Smith et al., 2006
Untyped	310 (human)	pol(p)	113	DQ300291	Smith et al., 2006
Untyped	N330 (human)	pol(p)	113	DQ300292	Smith et al., 2006
Untyped	02012181 (California sea lion)	pol(p)+capsid(p)	1668	DQ666635	Reid et al., 2007

CG = complete genome; (p) = partial gene sequence; N/A = not available on the EMBL/GenBank/DDBJ databases

References

Ganova-Raeva, L., Smith, A.W., Fields, H. and Khudyakov, Y. (2004). New calicivirus isolated from walrus. Virus Res. 102: 207-213.

Martin Alonso, J.M., Skilling, D.E., Gonzalez Molleda, L., del Barrio, G., RA Machin, A., Keefer, N.K., Matson, D.O., Iversen, P.L., Smith, A.W., Parra, F. (2005). Isolation and characterization of a new Vesivirus from rabbits. Virology 337: 373-383.

Matson, D.O., Zhong, W.-M., Adams, V., McCabe, E.R.B. and Smith, A.W. Characterization of the primate calicivirus PCV (Pan-1) genome. Unpublished.

Matson, D.O., Berke, T., Dinulos, M.B., Poet, E., Zhong, W.-M., Dai, X.M., Jiang, X., Golding, B. and Smith, A.V. (1996). Partial characterization of the genome of nine animal caliciviruses. Arch. Virol. 141: 2443-2456.

Neill, J.D. (1992). Nucleotide sequence of the capsid protein gene of two serotypes of San Miguel sea lion virus: identification of conserved and non-conserved amino acid sequences among calicivirus capsid proteins. Virus Res. 24: 221-222.

Neill, J.D. (b). Nucleotide sequence of the non-structural gene of San Miguel sea lion virus serotypes 1 and 4. Unpublished. (John D. Neill, VCR, National Animal Disease Center, P. O. Box 70, Ames, IA 50010, USA)

Neill, J.D., Meyer, R.F. and Seal, B.S. (1995). Genetic relatedness of the caliciviruses: San Miguel sea lion and the vesicular exanthema of swine viruses constitute a single genotype within the Caliciviridae. J. Virol. 69: 4484-4488.

Neill, J.D., Meyer, R.F. and Seal, B.S. (1998). The capsid protein of vesicular exanthema of swine virus serotype A48: relationship to the capsid protein of other animal caliciviruses. Virus Res. 54: 39-50.

Neill, J.D., Seal, B.S. and Ridpath, J.F. Complete nucleotide sequence of San Miguel sea lion virus serotype 1. Unpublished (a).

Neill J.D., Meyer R.F., Seal B.S. Complete nucleotide sequence of the genomic RNA of vesicular exanthema of swine virus A48". Unpublished (b).

Reid, S.M., Ansell, D.M., Ferris, N.P., Hutchings, G.H., Knowles, N.J. and Smith, A.W. (1999). Development of a reverse transcription polymerase chain reaction procedure for the detection of marine caliciviruses with potential application for nucleotide sequencing. Journal of Virological Methods 82: 99-107.

Reid, S.M., King, D.P., Shaw, A.E., Knowles, N.J., Hutchings, G.H., Cooper, E.J., Smith, A.W. and Ferris, N.P. (2007). Development of a real-time reverse transcription polymerase chain reaction assay for detection of marine caliciviruses (genus Vesivirus). J. Virol. Methods 140: 166-173.

Rinehart-Kim, J.E., Zhong, W.M., Jiang, X., Smith, A.W., Matson, D.O. (1998). Complete nucleotide sequence and genomic organization of a primate calicivirus, Pan-1. Arch. Virol. 0: 0000-000.

Seal, B.S., Lutze-Wallace, C., Kreutz, L.C., Sapp, T., Dulac, G.C. and Neill, J.D. (1995). Isolation of caliciviruses from skunks that are antigenically and genotypically related to San Miguel sea lion virus. Virus Research 37: 1-12.

Smith, A.W., Berry, E.S., Skilling, D.E., Barlough, J.E., Poet, S.E., Berke, T., Mead, J. and Matson, D.O. (1998). In vitro isolation and characterization of a calicivirus causing a vesicular disease of the hands and feet. Clin. Infect. Dis. 26: 434-439.

Smith, A.W., Skilling, D.E., Matson, D.O., Kroeker, A.D., Stein, D.A., Berke, T. and Iversen, P.L. (2002). Detection of vesicular exanthema of swine-like calicivirus in tissues from a naturally infected spontaneously aborted bovine fetus. J Am Vet Med Assoc. 220: 455-458.

Smith, A.W., Iversen, P.L., Skilling, D.E., Stein, D.A., Bok, K. and Matson, D.O. (2006). Vesivirus viremia and seroprevalence in humans. J. Med. Virol. 78: 693-701.

Zintz, C.B., Bok, K., Pager, C., Krishna, N.K., Smith, A.W. and Matson, D.O. Molecular characterization and prediction of tertiary structure of complete capsid genes of unknown animal calicivirus isolates. Unpublished. [Pediatrics, Center for Pediatric Research-EVMS, 855 West Brambleton Avenue, Norfolk, VA 23510, USA]

Genus: Vesivirus

Species: Vesicular exanthema of swine virus (VESV)

References